Genome Warehouse

Scientific Name: Rhododendron vialii
Common Names: -
Bioproject: PRJCA015878
Biosample: SAMC1171672
Accession No.: GWHCAXW00000000
GWH reannotation accession: -
GSA raw reads: CRR719647
GVM variations of the species: -
Submitter Organization: Bioinformatics, Kunming Institute Of Botany, Chinese Academy of Sciences (CAS)
Contact: Rengang Zhang, zhangrengang@mail.kib.ac.cn
Sequence author(s): Rengang Zhang
Released Date: 2023-04-15
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: hifiasm 0.16.1-r375
Sequencing & coverage: PacBio 30.0
Download: DNA GFF RNA CDS Protein
Publication(s): Yuhang Chang, et al. A haplotype-resolved genome assembly of Rhododendron vialii based on PacBio HiFi reads and Hi-C data. Scientific Data. 2023, 10(1): 451.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHCAXW00000000	-	RvV1	Draft genome in chromosome level	2023-04-15	DNA GFF RNA CDS Protein

Genome size (bp)	1,055,572,516
GC content	39.48%
Organellas sequence No.	2
Genome sequence No.	28
Maximum genome sequence length (bp)	49,061,468
Minimum genome sequence length (bp)	177,205
Average genome sequence length (bp)	37,699,018
Genome sequence N50 (bp)	41,813,812
Genome sequence N90 (bp)	35,586,280

Annotation of Whole Genome Assembly

	Protein	tRNA	rRNA	ncRNA	Total
Chloroplast	8	35	0	19	62
Mitochondrion	29	20	0	17	66
Others	79,581	715	3,039	1,693	85,028
Total	79,618	770	3,039	1,729	85,156

Annotation Details

ChrID	Protein	tRNA	rRNA	ncRNA	Total
Chloroplast	8	35	0	19	62
Mitochondrion	29	20	0	17	66
Others	79,581	715	3,039	1,693	85,028
Total	79,618	770	3,039	1,729	85,156