- Scientific Name
- Brassica juncea
- Common Names
- brown mustard, Indian mustard;
- Bioproject
- PRJCA015688
- Biosample
- SAMC1163735
- Accession No.
- GWHCAYN00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Life Science, Xinyang Normal University
- Contact
- Shuangping Heng(shuangpingheng@126.com)
- Sequence author(s)
- Shuangping Heng
- Released Date
- 2025-03-21
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- GS De Novo Assembler v1.0
- Sequencing & coverage
- Illumina NovaSeq 6000 99.43
PacBio 99.95 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 961,721,477 |
| GC content | 38.06% |
| Chromosomes sequence No. | 18 |
| Genome sequence No. | 515 |
| Maximum genome sequence length (bp) | 73,231,756 |
| Minimum genome sequence length (bp) | 18,248 |
| Average genome sequence length (bp) | 1,867,420 |
| Genome sequence N50 (bp) | 58,490,459 |
| Genome sequence N90 (bp) | 30,358,234 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 85,731 | 85,731 |
| Others | 611 | 611 |
| Total | 86,342 | 86,342 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chrA1 | 4,220 | 4,220 |
| chrA10 | 3,051 | 3,051 |
| chrA2 | 4,154 | 4,154 |
| chrA3 | 5,851 | 5,851 |
| chrA4 | 2,889 | 2,889 |
| chrA5 | 3,728 | 3,728 |
| chrA6 | 4,170 | 4,170 |
| chrA7 | 3,803 | 3,803 |
| chrA8 | 3,142 | 3,142 |
| chrA9 | 6,632 | 6,632 |
| chrB1 | 4,734 | 4,734 |
| chrB2 | 7,241 | 7,241 |
| chrB3 | 5,546 | 5,546 |
| chrB4 | 5,123 | 5,123 |
| chrB5 | 5,819 | 5,819 |
| chrB6 | 5,379 | 5,379 |
| chrB7 | 4,619 | 4,619 |
| chrB8 | 5,630 | 5,630 |
| Others | 611 | 611 |
| Total | 86,342 | 86,342 |