- Scientific Name
- Malus fusca
- Common Names
- Oregon crabapple;
- Bioproject
- PRJCA015452
- Biosample
- SAMC1150991
- Accession No.
- GWHCAXO00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Horticulture, China Agricultural University
- Contact
- Haochen Sun, fei_chen980615@163.com
- Sequence author(s)
- Wei Li, Haochen Sun, Shiyao Wang, Zijun Wang
- Released Date
- 2025-02-10
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15_r334
- Sequencing & coverage
- PacBio 41.38
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Wei Li, et al. Pan-genome analysis reveals the evolution and diversity of Malus. Nature Genetics. 2025, 57(5): 1274-1286.
Statistics of Genome Assembly
| Genome size (bp) | 667,823,656 |
| GC content | 38.32% |
| Contig sequence No. | 416 |
| Maximum contig sequence length (bp) | 56,333,618 |
| Minimum contig sequence length (bp) | 11,443 |
| Average contig sequence length (bp) | 1,605,345 |
| Contig N50 (bp) | 16,980,038 |
| Contig N90 (bp) | 4,688,929 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 48,429 | 48,429 |