- Scientific Name
- Salix arbutifolia
- Common Names
- Chosenia arbutifolia, Chosenia bracteosa
- Bioproject
- PRJCA016000
- Biosample
- SAMC1189909
- Accession No.
- GWHCBGB00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- -, Kunming Institute Of Botany, Chinese Academy of Sciences
- Contact
- Rengang Zhang, zrg1989@qq.com
- Sequence author(s)
- Rengang Zhang
- Released Date
- 2024-03-21
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.16
- Sequencing & coverage
- PacBio 80
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Yi Wang, et al. Gap-free X and Y chromosome assemblies of Salix arbutifolia reveal an evolutionary change from male to female heterogamety in willows, without a change in the position of the sex-determining locus. New Phytologist. 2024, 242(6): 2872-2887.
Statistics of Genome Assembly
| Genome size (bp) | 611,699,488 |
| GC content | 34.42% |
| Organellas sequence No. | 2 |
| Genome sequence No. | 40 |
| Maximum genome sequence length (bp) | 28,382,032 |
| Minimum genome sequence length (bp) | 155,219 |
| Average genome sequence length (bp) | 15,292,487 |
| Genome sequence N50 (bp) | 16,446,435 |
| Genome sequence N90 (bp) | 13,287,606 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Total | |
|---|---|---|---|---|---|
| Chloroplast | 49 | 28 | 0 | 14 | 91 |
| Mitochondrion | 169 | 20 | 0 | 10 | 199 |
| Others | 95,203 | 1,178 | 1,383 | 1,388 | 99,152 |
| Total | 95,421 | 1,226 | 1,383 | 1,412 | 99,442 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | ncRNA | Total |
|---|---|---|---|---|---|
| Chloroplast | 49 | 28 | 0 | 14 | 91 |
| Mitochondrion | 169 | 20 | 0 | 10 | 199 |
| Others | 95,203 | 1,178 | 1,383 | 1,388 | 99,152 |
| Total | 95,421 | 1,226 | 1,383 | 1,412 | 99,442 |