Genome Warehouse

Scientific Name: Salix babylonica
Common Names: weeping willow;
Bioproject: PRJCA016000
Biosample: SAMC1189911
Accession No.: GWHCBGD00000000
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: -
Submitter Organization: -, Kunming Institute Of Botany, Chinese Academy of Sciences
Contact: Rengang Zhang, zrg1989@qq.com
Sequence author(s): Rengang Zhang
Released Date: 2024-03-21
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: hifiasm 0.16
Sequencing & coverage: PacBio 80
Download: DNA GFF RNA CDS Protein
Publication(s): Li He, et al. Allopolyploidization from two dioecious ancestors leads to recurrent evolution of sex chromosomes. Nature Communications. 2024, 15(1): 6893.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHCBGD00000000	-	Sbab-female	Draft genome in chromosome level	2024-03-21	DNA GFF RNA CDS Protein

Genome size (bp)	1,285,971,139
GC content	34.04%
Organellas sequence No.	2
Genome sequence No.	78
Maximum genome sequence length (bp)	31,590,746
Minimum genome sequence length (bp)	155,626
Average genome sequence length (bp)	16,486,809
Genome sequence N50 (bp)	16,868,069
Genome sequence N90 (bp)	13,375,148

Annotation of Whole Genome Assembly

	Protein	tRNA	rRNA	ncRNA	Total
Chloroplast	37	27	0	14	78
Mitochondrion	131	22	0	18	171
Others	161,285	2,379	1,528	2,498	167,690
Total	161,453	2,428	1,528	2,530	167,939

Annotation Details

ChrID	Protein	tRNA	rRNA	ncRNA	Total
Chloroplast	37	27	0	14	78
Mitochondrion	131	22	0	18	171
Others	161,285	2,379	1,528	2,498	167,690
Total	161,453	2,428	1,528	2,530	167,939