- Scientific Name
- Pinellia ternata
- Common Names
- Pinellia tuberifera
- Bioproject
- PRJCA016404
- Biosample
- SAMC1202756
- Accession No.
- GWHCBHK00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR737163
- GVM variations of the species
- -
- Submitter Organization
- Haixia Institute of Science Technology, Fujian Agriculture and Forestry University
- Contact
- Haifeng Jia(jiahaifeng1218@163.com)
- Sequence author(s)
- Tao Xue, Haifeng Jia
- Released Date
- 2024-04-23
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- HiFiasm 0.12-r304
- Sequencing & coverage
- PacBio 21.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 2,081,689,626 |
| GC content | 45.75% |
| Chromosomes sequence No. | 13 |
| Genome sequence No. | 1,598 |
| Maximum genome sequence length (bp) | 189,526,005 |
| Minimum genome sequence length (bp) | 5,000 |
| Average genome sequence length (bp) | 1,302,684 |
| Genome sequence N50 (bp) | 149,990,173 |
| Genome sequence N90 (bp) | 117,765,594 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 35,634 | 35,634 |
| Others | 1,406 | 1,406 |
| Total | 37,040 | 37,040 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,057 | 4,057 |
| chr10 | 2,138 | 2,138 |
| chr11 | 2,030 | 2,030 |
| chr12 | 1,643 | 1,643 |
| chr13 | 1,376 | 1,376 |
| chr2 | 2,972 | 2,972 |
| chr3 | 3,268 | 3,268 |
| chr4 | 2,141 | 2,141 |
| chr5 | 5,038 | 5,038 |
| chr6 | 2,623 | 2,623 |
| chr7 | 3,563 | 3,563 |
| chr8 | 2,057 | 2,057 |
| chr9 | 2,728 | 2,728 |
| Others | 1,406 | 1,406 |
| Total | 37,040 | 37,040 |