- Scientific Name
- Acorus calamus
- Common Names
- flagroot, sweet flag;
- Bioproject
- PRJCA017027
- Biosample
- SAMC1252191
- Accession No.
- GWHCBII00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR788503
- GVM variations of the species
- -
- Submitter Organization
- College of Landscape Architecture, Fujian Agriculture and Forestry University
- Contact
- Zhong-Jian Liu, zjliu@fafu.edu.cn
- Sequence author(s)
- Liang Ma, Ke-Wei Liu, Zhen Li, Yu-Yun Hsiao, Yiying Qi, Tao Fu, Guang-Da Tang, Di-Yang Zhang, Wei-Hong Sun, Ding-Kun Liu, Yuanyuan Li, Gui-Zhen Chen, Xue-Die Liu, Xing-Yu Liao, Yu-Ting Jiang, Xia Yu, Yang Hao, JIe Huang, Xue-Wei Zhao, Shi-Jie Ke, You-Yi Chen, Wan-Lin Wu, Jui-Ling Hsu, Yu-Fu Lin, Ming-Der Huang, Chia-Ying Li, Lai_Qiang Huang, Zhi-Wen Wang, Xiang Zhao, Wen-Ying Zhong, Dong-Hui Peng, Sagheer Ahmad, Siren Lan, Ji-Sen Zhang, Wen-Chieh Tsai, Yves Van de Peer, Zhong-Jian Liu
- Released Date
- 2023-05-17
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- smartdenovo v1.0
- Sequencing & coverage
- PacBio 126.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Liang Ma, et al. Diploid and tetraploid genomes of Acorus and the evolution of monocots. Nature Communications. 2023, 14.
Statistics of Genome Assembly
| Genome size (bp) | 721,748,827 |
| GC content | 37.14% |
| Genome sequence No. | 1,543 |
| Maximum genome sequence length (bp) | 46,882,465 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 467,757 |
| Genome sequence N50 (bp) | 30,794,984 |
| Genome sequence N90 (bp) | 24,976,020 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 46,065 | 46,065 |