- Scientific Name
- Silene latifolia
- Common Names
- -
- Bioproject
- PRJCA014197
- Biosample
- SAMC1035442
- Accession No.
- GWHCBIJ00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University
- Contact
- Baolin Kan(15776501006@163.com)
- Sequence author(s)
- Baolin Kan
- Released Date
- 2023-05-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- SMARTdenovo FEB-2021
- Sequencing & coverage
- PacBio 80.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Jingjing Yue, et al. The origin and evolution of sex chromosomes,revealed by sequencing of the Silene latifolia female genome. Current Biology. 2023.
Statistics of Genome Assembly
| Genome size (bp) | 2,638,611,122 |
| GC content | 38.90% |
| Chromosomes sequence No. | 12 |
| Super-scaffold sequence No. | 4,625 |
| Maximum super-scaffold sequence length (bp) | 370,597,487 |
| Minimum super-scaffold sequence length (bp) | 1,000 |
| Average super-scaffold sequence length (bp) | 570,511 |
| Super-scaffold N50 (bp) | 193,566,110 |
| Super-scaffold N90 (bp) | 165,362,148 |
| Contig sequence No. | 5,426 |
| Maximum contig sequence length (bp) | 80,397,000 |
| Minimum contig sequence length (bp) | 1,000 |
| Average contig sequence length (bp) | 486,276 |
| Contig N50 (bp) | 23,141,000 |
| Contig N90 (bp) | 1,342,000 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 35,734 | 35,734 |
| Others | 2,062 | 2,062 |
| Total | 37,796 | 37,796 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,373 | 3,373 |
| chr10 | 3,231 | 3,231 |
| chr11 | 2,708 | 2,708 |
| chr2 | 3,437 | 3,437 |
| chr3 | 2,977 | 2,977 |
| chr4 | 2,501 | 2,501 |
| chr5 | 2,890 | 2,890 |
| chr6 | 1,896 | 1,896 |
| chr7 | 2,571 | 2,571 |
| chr8 | 2,586 | 2,586 |
| chr9 | 3,329 | 3,329 |
| chrX | 4,235 | 4,235 |
| Others | 2,062 | 2,062 |
| Total | 37,796 | 37,796 |