- Scientific Name
- Sporobolus alterniflorus
- Common Names
- salt marsh cordgrass; smooth cordgrass; Spartina alterniflora
- Bioproject
- PRJCA016599
- Biosample
- SAMC1223730
- Accession No.
- GWHCBIM00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Fudan University
- Contact
- Yan Hao, 20110700134@fudan.edu.cn
- Sequence author(s)
- Yan Hao
- Released Date
- 2024-01-16
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- GS De Novo Assembler v2.8
- Sequencing & coverage
- PacBio 555.25
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 1,631,144,040 |
| GC content | 44.95% |
| Genome sequence No. | 763 |
| Maximum genome sequence length (bp) | 73,030,954 |
| Minimum genome sequence length (bp) | 9,535 |
| Average genome sequence length (bp) | 2,137,803 |
| Genome sequence N50 (bp) | 50,761,989 |
| Genome sequence N90 (bp) | 36,182,716 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Others | Total | |
|---|---|---|---|---|
| Total | 73,571 | 17 | 73,681 | 147,269 |