- Scientific Name
- Raphanus sativus
- Common Names
- radish;
- Bioproject
- PRJCA011486
- Biosample
- SAMC865303
- Accession No.
- GWHCBIT00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Horticulture, Nanjing Agricultural University
- Contact
- Liwang Liu(nauliulw@njau.edu.cn)
- Sequence author(s)
- Liang Xu
- Released Date
- 2023-05-26
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- FALCON ver. 0.3.0
Arrow ver. 2.1.0 - Sequencing & coverage
- PacBio 104.96
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Liang Xu, et al. A chromosome-level genome assembly of radish (Raphanus sativus L.) revealsinsights into genome adaptation and differential bolting regulation. Plant Biotechnology Journal. 2023, 21(5): 990-991004.
Statistics of Genome Assembly
| Genome size (bp) | 476,319,557 |
| GC content | 36.65% |
| Genome sequence No. | 265 |
| Maximum genome sequence length (bp) | 62,079,342 |
| Minimum genome sequence length (bp) | 50,210 |
| Average genome sequence length (bp) | 1,797,432 |
| Genome sequence N50 (bp) | 56,875,523 |
| Genome sequence N90 (bp) | 36,290,154 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 40,100 | 40,100 |