- Scientific Name
- Armoracia rusticana
- Common Names
- horseradish; Armoracia lapathifolia, Armoracia rustica
- Bioproject
- PRJCA009966
- Biosample
- SAMC797689
- Accession No.
- GWHBJLW00000000.3
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Horticulture, Beijing Agro-biotechnology Research Center, Beijing Academy of Agriculture and Forestry Sciences
- Contact
- Fei Shen(shenf1028@gmail.com)
- Sequence author(s)
- Fei Shen
- Released Date
- 2023-05-30
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- HIFIASM 1.95
- Sequencing & coverage
- PacBio 47.0
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Fei Shen, et al. The allotetraploid horseradish genome provides insights into subgenomediversification and formation of critical traits. Nature Communications. 2023, 14.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBJLW00000000 | - | Nextdenovo | Draft genome in chromosome level | 2022-06-14 |
DNA
|
| GWHBJLW00000000.1 | - | HD2 | Draft genome in chromosome level | 2022-08-19 |
DNA
|
| GWHBJLW00000000.2 | - | horseradish | Draft genome in chromosome level | 2022-12-28 |
DNA
|
| GWHBJLW00000000.3 | - | horseradish_t2t | Draft genome in scaffold level | 2023-05-30 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 610,052,710 |
| GC content | 37.78% |
| Scaffold sequence No. | 85 |
| Maximum scaffold sequence length (bp) | 46,531,992 |
| Minimum scaffold sequence length (bp) | 18,041 |
| Average scaffold sequence length (bp) | 7,177,091 |
| Scaffold N50 (bp) | 36,523,187 |
| Scaffold N90 (bp) | 33,226,492 |