- Scientific Name
- Fusarium oxysporum f. cubense
- Common Names
- Fusarium cubense, Fusarium oxysporum f. cubense, Fusarium oxysporum var. cubense
- Bioproject
- PRJCA001282
- Biosample
- SAMC064005
- Accession No.
- GWHAASU00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR049239
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University
- Contact
- Yingzi Yun(yingziyun@fafu.edu.cn), Aixia Song(1570012269@qq.com), Zonghua Wang(zonghuaw@163.com), Liangsheng Zhang(fafuzhang@163.com)
- Sequence author(s)
- Yingzi Yun, Aixia Song, Zonghua Wang, Liangsheng Zhang
- Released Date
- 2019-04-28
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- canu v1.5
- Sequencing & coverage
- PacBio 145.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Yingzi Yun, et al. Genome data of Fusarium oxysporum f. sp. cubense race 1 and tropical race 4 isolates using long-read sequencing. IS-MPMI. 2019, 32(10):1270-1272.
Statistics of Genome Assembly
| Genome size (bp) | 48,387,182 |
| GC content | 47.47% |
| Genome sequence No. | 24 |
| Maximum genome sequence length (bp) | 6,708,354 |
| Minimum genome sequence length (bp) | 14,589 |
| Average genome sequence length (bp) | 2,016,133 |
| Genome sequence N50 (bp) | 4,400,610 |
| Genome sequence N90 (bp) | 2,761,144 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Total | 15,519 | 11,978 | 27,497 |