Genome Warehouse

Scientific Name: Cyprinus carpio haematopterus
Common Names: Huanghe carp; Amur carp;
Bioproject: PRJCA001408
Biosample: SAMC068936
Accession No.: GWHAATB00000000
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: -
Submitter Organization: COLLEGE OF OCEAN & EARTH SCIENCES, Xiamen University
Contact: Peng Xu(xupeng77@xmu.edu.cn)
Sequence author(s): Peng Xu
Released Date: 2019-05-09
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: SOAPdenovo 2017-08-05
Sequencing & coverage: Illumina HiSeq 430.5
Download: DNA GFF RNA CDS Protein
Reannotation Download: -
Publication(s): Peng Xu, et al. The allotetraploid origin and asymmetrical genome evolution of the common carp Cyprinus carpio. Nature Communications. 2019, 10(1):4625.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHAATB00000000	-	Yellow_River_carp	Draft genome in chromosome level	2019-05-09	DNA GFF RNA CDS Protein

Genome size (bp)	1,424,950,904
GC content	36.93%
Genome sequence No.	143,167
Maximum genome sequence length (bp)	37,007,192
Minimum genome sequence length (bp)	200
Average genome sequence length (bp)	9,953
Genome sequence N50 (bp)	24,711,792
Genome sequence N90 (bp)	126,729

Annotation of Whole Genome Assembly

	Protein	Total
Total	44,626	44,626