- Scientific Name
- Coix lacryma-jobi
- Common Names
- Job's tears; Coix lachryma-jobi, Coix lacryma
- Bioproject
- PRJCA001469
- Biosample
- SAMC070698
- Accession No.
- GWHAAYR00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Agronomy and Biotechnology, China Agricultural University
- Contact
- Hongbing Liu(hbliu@cau.edu.cn), Junpeng Shi(shijunpeng@cau.edu.cn), Zexi Cai(caizexi123@cau.edu.cn), Yumin Huang(ymhuang@cau.edu.cn)
- Sequence author(s)
- Hongbing Liu, Junpeng Shi, Zexi Cai, Yumin Huang
- Released Date
- 2019-06-04
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- HERA 2018
- Sequencing & coverage
- PacBio 66.0
Illumina HiSeq 2000 172.6 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Yangguang Hua, et al. Genome-wide analysis of the HSP20 gene family and its response to heat anddrought stress in Coix (Coix lacryma-jobi L.). BMC Genomics. 2023, 24.
Statistics of Genome Assembly
| Genome size (bp) | 1,731,458,735 |
| GC content | 46.68% |
| Chromosomes sequence No. | 10 |
| Genome sequence No. | 1,233 |
| Maximum genome sequence length (bp) | 190,792,110 |
| Minimum genome sequence length (bp) | 649 |
| Average genome sequence length (bp) | 1,404,265 |
| Genome sequence N50 (bp) | 161,246,920 |
| Genome sequence N90 (bp) | 135,077,776 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Others | Total | |
|---|---|---|---|---|
| Chromosome | 66,804 | 27,642 | 218 | 94,664 |
| Others | 4,633 | 1,861 | 18 | 6,512 |
| Total | 71,437 | 29,503 | 236 | 101,176 |
Annotation Details
| ChrID | Protein | Pseudogene | Others | Total |
|---|---|---|---|---|
| chr1 | 8,039 | 3,594 | 27 | 11,660 |
| chr10 | 4,425 | 1,461 | 3 | 5,889 |
| chr2 | 10,310 | 4,434 | 42 | 14,786 |
| chr3 | 5,952 | 2,519 | 19 | 8,490 |
| chr4 | 9,542 | 4,240 | 42 | 13,824 |
| chr5 | 4,834 | 1,989 | 11 | 6,834 |
| chr6 | 8,076 | 3,349 | 31 | 11,456 |
| chr7 | 5,039 | 1,888 | 17 | 6,944 |
| chr8 | 4,638 | 1,705 | 11 | 6,354 |
| chr9 | 5,949 | 2,463 | 15 | 8,427 |
| Others | 4,633 | 1,861 | 18 | 6,512 |
| Total | 71,437 | 29,503 | 236 | 101,176 |