- Scientific Name
- Acinetobacter calcoaceticus
- Common Names
- Acinetobacter genomosp. 1, Acinetobacter genomospecies 1, Micrococcus calcoaceticus, Moraxella calcoacetica, Neisseria winogradskyi
- Bioproject
- PRJCA017599
- Biosample
- SAMC1308441
- Accession No.
- GWHDECV00000000
- GWH reannotation accession
- GWHRA_DECV00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Health Supervision and Surveillance, Chinese PLA Center for Disease Control and Prevention
- Contact
- Xiaofeng Hu, xiaofenghu1988@sohu.com
- Sequence author(s)
- Xiaofeng Hu
- Released Date
- 2023-06-12
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo v2.04
- Sequencing & coverage
- Illumina HiSeq 2500 100.0
- Download
- DNA Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- Xiaofeng Hu, et al. Evolution, dissemination, and genetic dynamics of the carbapenem resistance gene bla (NDM) in China. Frontiers in Cellular And Infection Microbiology. 2025, 15: 1608826.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHDECV00000000 | GWHRA_DECV00000000.1 | AhXM005 | Draft genome in scaffold level | 2023-06-12 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,056,548 |
| GC content | 38.82% |
| Scaffold sequence No. | 85 |
| Maximum scaffold sequence length (bp) | 273,392 |
| Minimum scaffold sequence length (bp) | 515 |
| Average scaffold sequence length (bp) | 47,724 |
| Scaffold N50 (bp) | 131,378 |
| Scaffold N90 (bp) | 29,988 |
Statistics of Genome Assembly
| Genome size (bp) | 4,056,548 |
| GC content | 38.82% |
| Scaffold sequence No. | 85 |
| Maximum scaffold sequence length (bp) | 273,392 |
| Minimum scaffold sequence length (bp) | 515 |
| Average scaffold sequence length (bp) | 47,724 |
| Scaffold N50 (bp) | 131,378 |
| Scaffold N90 (bp) | 29,988 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3,743 | 63 | 3 | 1 | 142 | 97 | 4,049 |