- Scientific Name
- Scutellaria baicalensis
- Common Names
- Baikal skullcap;
- Bioproject
- PRJCA016803
- Biosample
- SAMC1271911
- Accession No.
- GWHDEDD00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR793521
- GVM variations of the species
- -
- Submitter Organization
- Medicinal Plants and Health Group, Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences
- Contact
- Weizhi Liao(huangqin202206@163.com)
- Sequence author(s)
- Qing Zhao, Tianlin Pei, Weizhi Liao
- Released Date
- 2023-12-05
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.16.1
- Sequencing & coverage
- PacBio 99.77
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Tianlin Pei, et al. Gap-free genome assembly and CYP450 gene family analysis reveal the biosynthesis of anthocyanins in Scutellaria baicalensis. Horticulture Research. 2023.
Statistics of Genome Assembly
| Genome size (bp) | 384,588,037 |
| GC content | 34.55% |
| Chromosomes sequence No. | 9 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Chromosome | 28,080 | 17 | 28,097 |
| Total | 28,080 | 17 | 28,097 |
Annotation Details
| ChrID | Protein | Others | Total |
|---|---|---|---|
| chr1 | 5,663 | 2 | 5,665 |
| chr2 | 4,216 | 2 | 4,218 |
| chr3 | 3,205 | 1 | 3,206 |
| chr4 | 2,647 | 5 | 2,652 |
| chr5 | 2,515 | 2 | 2,517 |
| chr6 | 1,942 | 2 | 1,944 |
| chr7 | 1,744 | 1 | 1,745 |
| chr8 | 2,098 | 0 | 2,098 |
| chr9 | 4,050 | 2 | 4,052 |
| Total | 28,080 | 17 | 28,097 |