- Scientific Name
- Salvia miltiorrhiza
- Common Names
- Chinese salvia, dan shen, redroot sage; Salvia miltiorhiza
- Bioproject
- PRJCA016502
- Biosample
- SAMC1214249
- Accession No.
- GWHDOEA00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 8,817,881 (SNP), 2,948,717 (Indel)
- Submitter Organization
- Cultivation Department, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College
- Contact
- Xian Pan, panxianer1996@163.com
- Sequence author(s)
- Xian Pan, Shanfa Lu
- Released Date
- 2023-07-07
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- GS De Novo Assembler v1
- Sequencing & coverage
- PacBio 111.57
Illumina HiSeq 2000 114.44 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Xian Pan, et al. Chromosome-level genome assembly of Salvia miltiorrhiza with orange roots uncovers the role of Sm2OGD3 in catalyzing 15,16-dehydrogenation of tanshinones. Horticulture Research. 2023, 10(6): uhad069.
Statistics of Genome Assembly
| Genome size (bp) | 530,963,680 |
| GC content | 37.46% |
| Chromosomes sequence No. | 8 |
| Genome sequence No. | 171 |
| Maximum genome sequence length (bp) | 77,728,060 |
| Minimum genome sequence length (bp) | 5,418 |
| Average genome sequence length (bp) | 3,105,051 |
| Genome sequence N50 (bp) | 60,279,590 |
| Genome sequence N90 (bp) | 45,638,638 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 30,164 | 30,164 |
| Others | 1,744 | 1,744 |
| Total | 31,908 | 31,908 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 5,006 | 5,006 |
| chr2 | 4,528 | 4,528 |
| chr3 | 3,237 | 3,237 |
| chr4 | 3,648 | 3,648 |
| chr5 | 3,637 | 3,637 |
| chr6 | 2,613 | 2,613 |
| chr7 | 3,680 | 3,680 |
| chr8 | 3,815 | 3,815 |
| Others | 1,744 | 1,744 |
| Total | 31,908 | 31,908 |