- Scientific Name
- Salmonella enterica subsp. enterica serovar Typhimurium
- Common Names
- Bacillus typhimurium, Salmonella choleraesuis serotype typhimurium, Salmonella enterica 1, 4, 5, 12, :i:1, 2, Salmonella enterica serotype Typhimurium, Salmonella enterica serovar Typhimurium, Salmonella enterica ser. typhimurium, Salmonella enterica subsp. enterica serovar 1, 4, 5, 12:i:1, 2, Salmonella typhi-murium, Salmonella typhimurium
- Bioproject
- PRJCA017599
- Biosample
- SAMC1308481
- Accession No.
- GWHDOFD00000000
- GWH reannotation accession
- GWHRA_DOFD00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Health Supervision and Surveillance, Chinese PLA Center for Disease Control and Prevention
- Contact
- Xiaofeng Hu(xiaofenghu1988@sohu.com)
- Sequence author(s)
- Xiaofeng Hu
- Released Date
- 2023-07-16
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo v2.04
- Sequencing & coverage
- Illumina HiSeq 2500 100.0
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- Xiaofeng Hu, et al. Evolution, dissemination, and genetic dynamics of the carbapenem resistance gene bla (NDM) in China. Frontiers in Cellular And Infection Microbiology. 2025, 15: 1608826.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHDOFD00000000 | GWHRA_DOFD00000000.1 | SSH006 | Draft genome in scaffold level | 2023-07-16 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,192,113 |
| GC content | 51.86% |
| Scaffold sequence No. | 79 |
| Maximum scaffold sequence length (bp) | 836,882 |
| Minimum scaffold sequence length (bp) | 523 |
| Average scaffold sequence length (bp) | 65,723 |
| Scaffold N50 (bp) | 276,923 |
| Scaffold N90 (bp) | 47,384 |
Statistics of Genome Assembly
| Genome size (bp) | 5,192,113 |
| GC content | 51.86% |
| Scaffold sequence No. | 79 |
| Maximum scaffold sequence length (bp) | 836,882 |
| Minimum scaffold sequence length (bp) | 523 |
| Average scaffold sequence length (bp) | 65,723 |
| Scaffold N50 (bp) | 276,923 |
| Scaffold N90 (bp) | 47,384 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4,960 | 80 | 12 | 8 | 131 | 100 | 5,291 |