- Scientific Name
- Scaevola taccada
- Common Names
- beach naupaka, half-flower; Lobelia taccada, Scaevola frutescens, Scaevola sericea
- Bioproject
- PRJCA018366
- Biosample
- SAMC2918937
- Accession No.
- GWHDOOS00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR824961
- GVM variations of the species
- -
- Submitter Organization
- -, South China Botonical Garden, Chinese Academy of Sciences
- Contact
- XunCheng Liu, xunchengliu@scbg.ac.cn
- Sequence author(s)
- XunCheng Liu
- Released Date
- 2025-04-08
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- NextDenovo 2.5.0
- Sequencing & coverage
- MGISEQ-2000 98.05
PromethION 100.0 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 1,248,340,826 |
| GC content | 36.60% |
| Chromosomes sequence No. | 8 |
| Genome sequence No. | 12 |
| Maximum genome sequence length (bp) | 192,152,539 |
| Minimum genome sequence length (bp) | 42,240 |
| Average genome sequence length (bp) | 104,028,402 |
| Genome sequence N50 (bp) | 156,235,579 |
| Genome sequence N90 (bp) | 146,775,269 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 23,795 | 23,795 |
| Others | 62 | 62 |
| Total | 23,857 | 23,857 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,892 | 3,892 |
| chr2 | 3,475 | 3,475 |
| chr3 | 3,483 | 3,483 |
| chr4 | 3,057 | 3,057 |
| chr5 | 2,606 | 2,606 |
| chr6 | 2,497 | 2,497 |
| chr7 | 2,431 | 2,431 |
| chr8 | 2,354 | 2,354 |
| Others | 62 | 62 |
| Total | 23,857 | 23,857 |