- Scientific Name
- Neptunomonas sp.
- Common Names
- -
- Bioproject
- PRJCA018239
- Biosample
- SAMC2923437
- Accession No.
- GWHDOYI00000000
- GWH reannotation accession
- GWHRA_DOYI00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Marine life science, Ocean University of China
- Contact
- Han Cui, cuihan@stu.ouc.edu.cn
- Sequence author(s)
- Han Cui
- Released Date
- 2023-07-21
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- maxbin 2.2.6
metabat 0.32.5
concoct 1.1 - Sequencing & coverage
- Illumina 10
Nanopore 30 - Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHDOYI00000000 | GWHRA_DOYI00000000.1 | AA123_MAG_249 | Draft genome in scaffold level | 2023-07-21 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 3,951,966 |
| GC content | 45.55% |
| Scaffold sequence No. | 45 |
| Maximum scaffold sequence length (bp) | 454,078 |
| Minimum scaffold sequence length (bp) | 5,038 |
| Average scaffold sequence length (bp) | 87,821 |
| Scaffold N50 (bp) | 209,211 |
| Scaffold N90 (bp) | 55,509 |
Statistics of Genome Assembly
| Genome size (bp) | 3,951,966 |
| GC content | 45.55% |
| Scaffold sequence No. | 45 |
| Maximum scaffold sequence length (bp) | 454,078 |
| Minimum scaffold sequence length (bp) | 5,038 |
| Average scaffold sequence length (bp) | 87,821 |
| Scaffold N50 (bp) | 209,211 |
| Scaffold N90 (bp) | 55,509 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3,597 | 54 | 1 | 1 | 18 | 54 | 3,725 |