- Scientific Name
- Roseibium aggregatum
- Common Names
- Stappia aggregata, Agrobacterium aggregatum, Labrenzia aggregata
- Bioproject
- PRJCA018239
- Biosample
- SAMC2923683
- Accession No.
- GWHDPHU00000000
- GWH reannotation accession
- GWHRA_DPHU00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Marine life science, Ocean University of China
- Contact
- Han Cui, cuihan@stu.ouc.edu.cn
- Sequence author(s)
- Han Cui
- Released Date
- 2023-07-21
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- maxbin 2.2.6
metabat 0.32.5
concoct 1.1 - Sequencing & coverage
- Illumina 10
Nanopore 30 - Download
- DNA Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHDPHU00000000 | GWHRA_DPHU00000000.1 | SA096_MAG_495 | Draft genome in scaffold level | 2023-07-21 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 7,206,200 |
| GC content | 59.78% |
| Scaffold sequence No. | 103 |
| Maximum scaffold sequence length (bp) | 1,566,753 |
| Minimum scaffold sequence length (bp) | 5,023 |
| Average scaffold sequence length (bp) | 69,963 |
| Scaffold N50 (bp) | 357,453 |
| Scaffold N90 (bp) | 27,705 |
Statistics of Genome Assembly
| Genome size (bp) | 7,206,200 |
| GC content | 59.78% |
| Scaffold sequence No. | 103 |
| Maximum scaffold sequence length (bp) | 1,566,753 |
| Minimum scaffold sequence length (bp) | 5,023 |
| Average scaffold sequence length (bp) | 69,963 |
| Scaffold N50 (bp) | 357,453 |
| Scaffold N90 (bp) | 27,705 |
Annotation of Whole Genome Assembly
| Protein | tRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 6,641 | 49 | 1 | 64 | 121 | 6,876 |