- Scientific Name
- Camellia sinensis
- Common Names
- black tea; Thea sinensis
- Bioproject
- PRJCA018172
- Biosample
- SAMC2900428
- Accession No.
- GWHDPJJ00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University
- Contact
- Weilong Kong, Weilong.Kong@whu.edu.cn
- Sequence author(s)
- Weilong Kong
- Released Date
- 2025-12-31
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- GS De Novo Assembler 2.5.2
- Sequencing & coverage
- Illumina HiSeq 4000 120.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 3,086,673,704 |
| GC content | 38.89% |
| Chromosomes sequence No. | 15 |
| Genome sequence No. | 1,872 |
| Maximum genome sequence length (bp) | 276,186,256 |
| Minimum genome sequence length (bp) | 13,513 |
| Average genome sequence length (bp) | 1,648,864 |
| Genome sequence N50 (bp) | 204,024,229 |
| Genome sequence N90 (bp) | 136,370,889 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Chromosome | 52,661 | 2,132 | 54,793 |
| Others | 947 | 42 | 989 |
| Total | 53,608 | 2,174 | 55,782 |
Annotation Details
| ChrID | Protein | Others | Total |
|---|---|---|---|
| chr1 | 4,808 | 193 | 5,001 |
| chr10 | 3,019 | 103 | 3,122 |
| chr11 | 2,889 | 109 | 2,998 |
| chr12 | 2,638 | 87 | 2,725 |
| chr13 | 3,018 | 122 | 3,140 |
| chr14 | 3,177 | 163 | 3,340 |
| chr15 | 2,274 | 82 | 2,356 |
| chr2 | 4,198 | 170 | 4,368 |
| chr3 | 4,021 | 158 | 4,179 |
| chr4 | 4,293 | 170 | 4,463 |
| chr5 | 3,568 | 170 | 3,738 |
| chr6 | 4,137 | 113 | 4,250 |
| chr7 | 3,998 | 170 | 4,168 |
| chr8 | 3,199 | 151 | 3,350 |
| chr9 | 3,424 | 171 | 3,595 |
| Others | 947 | 42 | 989 |
| Total | 53,608 | 2,174 | 55,782 |