- Scientific Name
- Sapindus mukorossi
- Common Names
- Chinese soapberry, dodan, mukuroji, soapnut;
- Bioproject
- PRJCA019364
- Biosample
- SAMC3036221
- Accession No.
- GWHDTYF00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Forestry, Beijing Forestry University
- Contact
- Liming Jia(jlm@bjfu.edu.cn), Zhong Chen(zhongchen@bjfu.edu.cn), Jiming Liu(18289143108@163.com)
- Sequence author(s)
- Liming Jia, Zhong Chen, Jiming Liu
- Released Date
- 2023-11-30
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- SMARTDENOVO 2021
- Sequencing & coverage
- PacBio 120.0
Illumina HiSeq 2000 260.0
Illumina Hiseq hic 200.0 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 494,367,950 |
| GC content | 33.32% |
| Chromosomes sequence No. | 14 |
| Organellas sequence No. | 2 |
| Genome sequence No. | 138 |
| Maximum genome sequence length (bp) | 59,813,689 |
| Minimum genome sequence length (bp) | 14,326 |
| Average genome sequence length (bp) | 3,582,376 |
| Genome sequence N50 (bp) | 30,650,372 |
| Genome sequence N90 (bp) | 25,348,953 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Total | |
|---|---|---|---|---|---|
| Chromosome | 24,536 | 499 | 60 | 433 | 25,528 |
| Chloroplast | 30 | 24 | 4 | 15 | 73 |
| Mitochondrion | 55 | 20 | 2 | 9 | 86 |
| Others | 225 | 4 | 1 | 3 | 233 |
| Total | 24,846 | 547 | 67 | 460 | 25,920 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | ncRNA | Total |
|---|---|---|---|---|---|
| chr1 | 2,736 | 55 | 0 | 47 | 2,838 |
| chr10 | 1,624 | 36 | 2 | 54 | 1,716 |
| chr11 | 1,502 | 33 | 7 | 38 | 1,580 |
| chr12 | 1,555 | 25 | 0 | 37 | 1,617 |
| chr13 | 1,423 | 30 | 3 | 23 | 1,479 |
| chr14 | 1,309 | 34 | 0 | 13 | 1,356 |
| chr2 | 3,141 | 71 | 0 | 35 | 3,247 |
| chr3 | 2,296 | 53 | 0 | 47 | 2,396 |
| chr4 | 1,652 | 23 | 1 | 20 | 1,696 |
| chr5 | 1,590 | 38 | 0 | 26 | 1,654 |
| chr6 | 1,335 | 8 | 1 | 11 | 1,355 |
| chr7 | 1,621 | 39 | 39 | 25 | 1,724 |
| chr8 | 1,273 | 15 | 0 | 35 | 1,323 |
| chr9 | 1,479 | 39 | 7 | 22 | 1,547 |
| Chloroplast | 30 | 24 | 4 | 15 | 73 |
| Mitochondrion | 55 | 20 | 2 | 9 | 86 |
| Others | 225 | 4 | 1 | 3 | 233 |
| Total | 24,846 | 547 | 67 | 460 | 25,920 |