- Scientific Name
- Jasminum sambac
- Common Names
- Arabian jasmine;
- Bioproject
- PRJCA019962
- Biosample
- SAMC3072334
- Accession No.
- GWHDUBQ00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Life Sciences, Fujian Normal University
- Contact
- Qinchang Chen, cqc2511@163.com
- Sequence author(s)
- Jingping Fang, Qinchang Chen
- Released Date
- 2023-09-21
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm+allhic hifiasm v1.16.1
- Sequencing & coverage
- PacBio 44.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 487,454,167 |
| GC content | 34.56% |
| Chromosomes sequence No. | 13 |
| Super-scaffold sequence No. | 26 |
| Maximum super-scaffold sequence length (bp) | 45,819,973 |
| Minimum super-scaffold sequence length (bp) | 2,769 |
| Average super-scaffold sequence length (bp) | 18,748,237 |
| Super-scaffold N50 (bp) | 38,933,210 |
| Super-scaffold N90 (bp) | 29,979,644 |
| Contig sequence No. | 132 |
| Maximum contig sequence length (bp) | 44,446,983 |
| Minimum contig sequence length (bp) | 2,769 |
| Average contig sequence length (bp) | 3,692,801 |
| Contig N50 (bp) | 7,180,757 |
| Contig N90 (bp) | 2,197,813 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 23,823 | 23,823 |
| Others | 145 | 145 |
| Total | 23,968 | 23,968 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,237 | 2,237 |
| chr10 | 1,673 | 1,673 |
| chr11 | 1,378 | 1,378 |
| chr12 | 1,618 | 1,618 |
| chr13 | 1,237 | 1,237 |
| chr2 | 2,455 | 2,455 |
| chr3 | 2,081 | 2,081 |
| chr4 | 2,153 | 2,153 |
| chr5 | 2,065 | 2,065 |
| chr6 | 1,618 | 1,618 |
| chr7 | 1,935 | 1,935 |
| chr8 | 1,832 | 1,832 |
| chr9 | 1,541 | 1,541 |
| Others | 145 | 145 |
| Total | 23,968 | 23,968 |