- Scientific Name
- Citrus australasica
- Common Names
- Australian finger-lime; Microcitrus australasica
- Bioproject
- PRJCA019902
- Biosample
- SAMC3069019
- Accession No.
- GWHDUCH00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- -, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland
- Contact
- Upuli Nakandala, u.nakandala@uq.edu.au
- Sequence author(s)
- Upuli Nakandala, Robert Henry, Agnelo Furtado, Ardy Kharabian Masouleh
- Released Date
- 2023-12-05
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm hifiasm-0.19.2-r560
- Sequencing & coverage
- PacBio 223.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Upuli Nakandala, et al. The genome of Citrus australasica reveals disease resistance and other species specific genes. Research Square. 2023.
Statistics of Genome Assembly
| Genome size (bp) | 344,299,584 |
| GC content | 38.56% |
| Chromosomes sequence No. | 9 |
| Genome sequence No. | 17 |
| Maximum genome sequence length (bp) | 49,522,301 |
| Minimum genome sequence length (bp) | 715,930 |
| Average genome sequence length (bp) | 20,252,917 |
| Genome sequence N50 (bp) | 35,040,242 |
| Genome sequence N90 (bp) | 26,099,255 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 41,219 | 41,219 |
| Others | 4,716 | 4,716 |
| Total | 45,935 | 45,935 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,988 | 3,988 |
| chr2 | 4,850 | 4,850 |
| chr3 | 3,823 | 3,823 |
| chr4 | 4,650 | 4,650 |
| chr5 | 7,348 | 7,348 |
| chr6 | 2,916 | 2,916 |
| chr7 | 4,387 | 4,387 |
| chr8 | 5,251 | 5,251 |
| chr9 | 4,006 | 4,006 |
| Others | 4,716 | 4,716 |
| Total | 45,935 | 45,935 |