- Scientific Name
- Populus simonii
- Common Names
- -
- Bioproject
- PRJCA020008
- Biosample
- SAMC3076197
- Accession No.
- GWHDUDC00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR885730
- GVM variations of the species
- -
- Submitter Organization
- Agriculture, Yangzhou University
- Contact
- yu bao, by961536@gmail.com
- Sequence author(s)
- yu bao
- Released Date
- 2023-09-27
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- wtdbg2 v2.5
- Sequencing & coverage
- Nanopore 160.0
- Download
- DNA
- Publication(s)
- Haoyang Xin, et al. Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes. Plant Physiology. 2024, 195(4): 2787-2798.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHDUDC00000000 | - | P. simonii | Draft genome in contig level | 2023-09-27 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 431,634,313 |
| GC content | 33.14% |
| Contig sequence No. | 2,814 |
| Maximum contig sequence length (bp) | 10,683,679 |
| Minimum contig sequence length (bp) | 2,091 |
| Average contig sequence length (bp) | 153,388 |
| Contig N50 (bp) | 1,167,091 |
| Contig N90 (bp) | 59,929 |