- Scientific Name
- Citrus australasica
- Common Names
- Australian finger-lime; Microcitrus australasica
- Bioproject
- PRJCA019902
- Biosample
- SAMC3069019
- Accession No.
- GWHDUEL00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Crop Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland
- Contact
- Upuli Nakandala(u.nakandala@uq.edu.au)
- Sequence author(s)
- Upuli Nakandala, Robert Henry, Agnelo Furtado, Ardy Kharabian Masouleh
- Released Date
- 2023-12-05
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm hifiasm-0.19.2-r560
- Sequencing & coverage
- PacBio 223.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Upuli Nakandala, et al. The genome of Citrus australasica reveals disease resistance and other species specific genes. Research Square. 2023.
Statistics of Genome Assembly
| Genome size (bp) | 327,535,308 |
| GC content | 37.66% |
| Chromosomes sequence No. | 9 |
| Genome sequence No. | 28 |
| Maximum genome sequence length (bp) | 47,366,630 |
| Minimum genome sequence length (bp) | 144,370 |
| Average genome sequence length (bp) | 11,697,690 |
| Genome sequence N50 (bp) | 32,268,268 |
| Genome sequence N90 (bp) | 26,077,537 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 34,314 | 34,314 |
| Others | 5,332 | 5,332 |
| Total | 39,646 | 39,646 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,716 | 3,716 |
| chr2 | 3,892 | 3,892 |
| chr3 | 3,696 | 3,696 |
| chr4 | 4,816 | 4,816 |
| chr5 | 5,341 | 5,341 |
| chr6 | 2,854 | 2,854 |
| chr7 | 4,067 | 4,067 |
| chr8 | 2,963 | 2,963 |
| chr9 | 2,969 | 2,969 |
| Others | 5,332 | 5,332 |
| Total | 39,646 | 39,646 |