- Scientific Name
- Citrus australasica
- Common Names
- Australian finger-lime; Microcitrus australasica
- Bioproject
- PRJCA019902
- Biosample
- SAMC3069019
- Accession No.
- GWHDUEM00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Crop Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland
- Contact
- Upuli Nakandala, u.nakandala@uq.edu.au
- Sequence author(s)
- Upuli Nakandala, Robert Henry, Agnelo Furtado, Ardy Kharabian Masouleh
- Released Date
- 2023-12-05
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm hifiasm-0.19.2-r560
- Sequencing & coverage
- PacBio 223.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Upuli Nakandala, et al. The genome of Citrus australasica reveals disease resistance and other species specific genes. Research Square. 2023.
Statistics of Genome Assembly
| Genome size (bp) | 323,341,092 |
| GC content | 37.43% |
| Chromosomes sequence No. | 9 |
| Genome sequence No. | 19 |
| Maximum genome sequence length (bp) | 48,946,739 |
| Minimum genome sequence length (bp) | 798,921 |
| Average genome sequence length (bp) | 17,017,952 |
| Genome sequence N50 (bp) | 34,392,890 |
| Genome sequence N90 (bp) | 26,019,700 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 38,869 | 38,869 |
| Others | 2,645 | 2,645 |
| Total | 41,514 | 41,514 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,967 | 3,967 |
| chr2 | 4,866 | 4,866 |
| chr3 | 3,634 | 3,634 |
| chr4 | 3,924 | 3,924 |
| chr5 | 6,474 | 6,474 |
| chr6 | 2,881 | 2,881 |
| chr7 | 5,575 | 5,575 |
| chr8 | 4,612 | 4,612 |
| chr9 | 2,936 | 2,936 |
| Others | 2,645 | 2,645 |
| Total | 41,514 | 41,514 |