- Scientific Name
- gut metagenome
- Common Names
- gut metabiota, gastrointestinal metagenome, gut microbiome, intestinal metagenome
- Bioproject
- PRJCA017302
- Biosample
- SAMC1269618
- Accession No.
- GWHEAWO00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR939059
- GVM variations of the species
- -
- Submitter Organization
- BGI, University of Chinese Academy of Sciences
- Contact
- Xingwei Shi(shixingwei@genomics.cn)
- Sequence author(s)
- Xingwei Shi
- Released Date
- 2024-01-01
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- MEGAHIT 1.2.9
- Sequencing & coverage
- COMPLETE_GENOMICS 10
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Xiaoping Li, et al. A unified catalog of 14,062 microbial species reference genomes provides new insight into the gut microbiota in high-altitude mammals. Microbiome. 2025, 13(1): 236.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHEAWO00000000 | - | SGB_3807 | Draft genome in scaffold level | 2024-01-01 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 3,491,486 |
| GC content | 41.40% |
| Scaffold sequence No. | 155 |
| Maximum scaffold sequence length (bp) | 108,592 |
| Minimum scaffold sequence length (bp) | 1,548 |
| Average scaffold sequence length (bp) | 22,526 |
| Scaffold N50 (bp) | 34,993 |
| Scaffold N90 (bp) | 11,648 |