- Scientific Name
- Oryza rufipogon
- Common Names
- common wild rice, red rice;
- Bioproject
- PRJCA002637
- Biosample
- SAMC184784
- Accession No.
- GWHALOI00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR135195
- GVM variations of the species
- -
- Submitter Organization
- college of agriculture, South China Agricultural University
- Contact
- Wei Li(liweisdau@126.com)
- Sequence author(s)
- Wei Li
- Released Date
- 2020-05-13
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Platanus 1.2.4
- Sequencing & coverage
- Illumina HiSeq 2000 451.0
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Wei Li, et al. Draft genomes of two outcrossing wild rice, Oryza rufipogon and O. longistaminata, reveal genomic features associated with mating‐system evolution. Plant Direct. 2020, 4(6): e00232.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHALOI00000000 | - | R1 | Draft genome in scaffold level | 2020-05-13 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 441,412,135 |
| GC content | 42.52% |
| Scaffold sequence No. | 1,019 |
| Maximum scaffold sequence length (bp) | 7,596,770 |
| Minimum scaffold sequence length (bp) | 514 |
| Average scaffold sequence length (bp) | 433,182 |
| Scaffold N50 (bp) | 1,935,928 |
| Scaffold N90 (bp) | 420,811 |