- Scientific Name
- Antiaris toxicaria
- Common Names
- jian xue feng hou, upas;
- Bioproject
- PRJCA020380
- Biosample
- SAMC3096937
- Accession No.
- GWHEQBD00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR917931
- GVM variations of the species
- -
- Submitter Organization
- CAS Key Laboratory of Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences
- Contact
- yunheng Ji, jiyh@mail.kib.ac.cn
- Sequence author(s)
- Ke Miao, Ya Wang
- Released Date
- 2024-01-08
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm v. 0.16.1-r375
- Sequencing & coverage
- PacBio 50.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Ke Miao, et al. Haplotype-resolved genome assembly of the upas tree (Antiaris toxicaria). Scientific data. 2024, 11(1): 1011.
Statistics of Genome Assembly
| Genome size (bp) | 1,343,931,234 |
| GC content | 35.59% |
| Chromosomes sequence No. | 26 |
| Organellas sequence No. | 2 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Total | |
|---|---|---|---|---|---|
| Chromosome | 60,119 | 766 | 1,765 | 1,621 | 64,271 |
| Chloroplast | 37 | 25 | 0 | 18 | 80 |
| Mitochondrion | 24 | 13 | 0 | 14 | 51 |
| Total | 60,180 | 804 | 1,765 | 1,653 | 64,402 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | ncRNA | Total |
|---|---|---|---|---|---|
| chr1 | 2,972 | 38 | 72 | 92 | 3,174 |
| chr10 | 3,609 | 51 | 7 | 99 | 3,766 |
| chr11 | 2,900 | 46 | 690 | 84 | 3,720 |
| chr12 | 2,581 | 46 | 577 | 87 | 3,291 |
| chr13 | 2,001 | 22 | 0 | 30 | 2,053 |
| chr14 | 1,827 | 24 | 0 | 32 | 1,883 |
| chr15 | 3,051 | 40 | 8 | 49 | 3,148 |
| chr16 | 2,682 | 40 | 8 | 45 | 2,775 |
| chr17 | 2,232 | 16 | 0 | 25 | 2,273 |
| chr18 | 1,949 | 18 | 0 | 22 | 1,989 |
| chr19 | 2,361 | 23 | 0 | 32 | 2,416 |
| chr2 | 2,710 | 38 | 64 | 99 | 2,911 |
| chr20 | 2,183 | 26 | 0 | 30 | 2,239 |
| chr21 | 1,990 | 36 | 2 | 39 | 2,067 |
| chr22 | 1,800 | 36 | 3 | 35 | 1,874 |
| chr23 | 1,785 | 11 | 1 | 22 | 1,819 |
| chr24 | 1,620 | 11 | 1 | 21 | 1,653 |
| chr25 | 1,902 | 17 | 0 | 64 | 1,983 |
| chr26 | 1,731 | 18 | 0 | 61 | 1,810 |
| chr3 | 2,796 | 35 | 0 | 98 | 2,929 |
| chr4 | 2,505 | 31 | 0 | 80 | 2,616 |
| chr5 | 1,863 | 22 | 156 | 94 | 2,135 |
| chr6 | 1,754 | 23 | 157 | 93 | 2,027 |
| chr7 | 1,711 | 24 | 4 | 100 | 1,839 |
| chr8 | 1,556 | 23 | 8 | 98 | 1,685 |
| chr9 | 4,048 | 51 | 7 | 90 | 4,196 |
| Chloroplast | 37 | 25 | 0 | 18 | 80 |
| Mitochondrion | 24 | 13 | 0 | 14 | 51 |
| Total | 60,180 | 804 | 1,765 | 1,653 | 64,402 |