Genome Warehouse

Scientific Name: Trapa natans
Common Names: water chestnut;
Bioproject: PRJCA016421
Biosample: SAMC1214804
Accession No.: GWHEQCD00000000
GWH reannotation accession: -
GSA raw reads: CRR767243
GVM variations of the species: -
Submitter Organization: College of life sciences, Zhejiang University
Contact: xinyi zhang(zhangxinyi997@gmail.com)
Sequence author(s): xinyi zhang
Released Date: 2023-12-15
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: HiFiasm v.0.16.0
Sequencing & coverage: PacBio 240.0
Download: DNA GFF RNA CDS Protein
Reannotation Download: -
Publication(s): xinyi zhang. Pangenome of water caltrop reveals structural variations and asymmetric subgenome divergence after allopolyploidization. Horticulture Research. 2023.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHEQCD00000000	-	TnA_NL	Draft genome in chromosome level	2023-12-15	DNA GFF RNA CDS Protein

Genome size (bp)	477,427,588
GC content	38.10%
Chromosomes sequence No.	24
Genome sequence No.	33
Maximum genome sequence length (bp)	36,443,901
Minimum genome sequence length (bp)	4,349
Average genome sequence length (bp)	14,467,503
Genome sequence N50 (bp)	21,229,637
Genome sequence N90 (bp)	13,548,919

Annotation of Whole Genome Assembly

Annotation Details