- Scientific Name
- Citrus reticulata
- Common Names
- mandarin orange, tangerine; Citrus poonensis
- Bioproject
- PRJCA019821
- Biosample
- SAMC3068880
- Accession No.
- GWHEQCO00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR881613
- GVM variations of the species
- -
- Submitter Organization
- National Key laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University
- Contact
- Liu shengjun, shengjun0724@163.com
- Sequence author(s)
- Liu shengjun
- Released Date
- 2024-11-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- wtdbg v.2.3
Nextdenovo v2.5.2
Necat v.1.0
SMARTdenovo v.1.0
Flye v.2.8.3 - Sequencing & coverage
- Hi-C 105.0
Nanopore ultralong 89.61 - Download
- DNA
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHEQCO00000000 | - | JZ | Draft genome in chromosome level | 2024-11-27 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 336,492,734 |
| GC content | 36.66% |
| Chromosomes sequence No. | 1 |
| Genome sequence No. | 10 |
| Maximum genome sequence length (bp) | 50,934,810 |
| Minimum genome sequence length (bp) | 26,109,669 |
| Average genome sequence length (bp) | 33,649,273 |
| Genome sequence N50 (bp) | 32,372,000 |
| Genome sequence N90 (bp) | 29,323,211 |