- Scientific Name
- Ehretia macrophylla
- Common Names
- -
- Bioproject
- PRJCA021125
- Biosample
- SAMC3159964
- Accession No.
- GWHEQHN00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- R&D Department, Hangzhou Kaitai Biotechnology Co., Ltd.
- Contact
- shangguo Feng(fengsg@hznu.edu.cn)
- Sequence author(s)
- shiping Cheng
- Released Date
- 2023-11-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.16.1-r375
3d-dna Phasing branch 201008 - Sequencing & coverage
- PacBio 90.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Shiping Cheng, et al. Haplotype-resolved chromosome-level genome assembly of Ehretia macrophylla. Scientific data. 2024, 11(1): 589.
Statistics of Genome Assembly
| Genome size (bp) | 3,419,127,179 |
| GC content | 39.37% |
| Chromosomes sequence No. | 40 |
| Organellas sequence No. | 2 |
| Genome sequence No. | 130 |
| Maximum genome sequence length (bp) | 151,004,203 |
| Minimum genome sequence length (bp) | 24,149 |
| Average genome sequence length (bp) | 26,300,978 |
| Genome sequence N50 (bp) | 89,603,608 |
| Genome sequence N90 (bp) | 64,118,344 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 70,518 | 70,518 |
| Chloroplast | 20 | 20 |
| Mitochondrion | 48 | 48 |
| Others | 231 | 231 |
| Total | 70,817 | 70,817 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,605 | 2,605 |
| chr10 | 1,176 | 1,176 |
| chr11 | 1,354 | 1,354 |
| chr12 | 1,774 | 1,774 |
| chr13 | 1,994 | 1,994 |
| chr14 | 1,329 | 1,329 |
| chr15 | 1,366 | 1,366 |
| chr16 | 2,094 | 2,094 |
| chr17 | 2,221 | 2,221 |
| chr18 | 2,076 | 2,076 |
| chr19 | 1,643 | 1,643 |
| chr2 | 1,827 | 1,827 |
| chr20 | 1,161 | 1,161 |
| chr21 | 2,481 | 2,481 |
| chr22 | 1,807 | 1,807 |
| chr23 | 1,881 | 1,881 |
| chr24 | 1,425 | 1,425 |
| chr25 | 1,169 | 1,169 |
| chr26 | 2,303 | 2,303 |
| chr27 | 2,833 | 2,833 |
| chr28 | 1,773 | 1,773 |
| chr29 | 1,419 | 1,419 |
| chr3 | 1,872 | 1,872 |
| chr30 | 1,114 | 1,114 |
| chr31 | 1,251 | 1,251 |
| chr32 | 1,856 | 1,856 |
| chr33 | 2,011 | 2,011 |
| chr34 | 1,298 | 1,298 |
| chr35 | 1,328 | 1,328 |
| chr36 | 1,884 | 1,884 |
| chr37 | 2,136 | 2,136 |
| chr38 | 2,044 | 2,044 |
| chr39 | 1,616 | 1,616 |
| chr4 | 1,392 | 1,392 |
| chr40 | 1,057 | 1,057 |
| chr5 | 1,212 | 1,212 |
| chr6 | 2,302 | 2,302 |
| chr7 | 2,968 | 2,968 |
| chr8 | 1,853 | 1,853 |
| chr9 | 1,613 | 1,613 |
| Chloroplast | 20 | 20 |
| Mitochondrion | 48 | 48 |
| Others | 231 | 231 |
| Total | 70,817 | 70,817 |