- Scientific Name
- Glycine soja
- Common Names
- wild soybean; Glycine max subsp. soja
- Bioproject
- PRJCA021300
- Biosample
- SAMC3175664
- Accession No.
- GWHEQVB00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR947527
- GVM variations of the species
- -
- Submitter Organization
- -, Kunming Institute of Botany, Chinese Academy of Sciences
- Contact
- Rengang Zhang, zrg1989@qq.com
- Sequence author(s)
- Rengang Zhang
- Released Date
- 2024-02-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.19.5-r592
- Sequencing & coverage
- PacBio 70
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Kaihua Jia, et al. Telomere-to-telomere genome assemblies of cultivated and wild soybean provide insights into evolution and domestication under structural variation. Plant Communications. 2024, 5(8): 100919.
Statistics of Genome Assembly
| Genome size (bp) | 1,025,096,400 |
| GC content | 35.13% |
| Organellas sequence No. | 1 |
| Genome sequence No. | 26 |
| Maximum genome sequence length (bp) | 64,644,278 |
| Minimum genome sequence length (bp) | 55,041 |
| Average genome sequence length (bp) | 39,426,785 |
| Genome sequence N50 (bp) | 52,185,571 |
| Genome sequence N90 (bp) | 44,617,881 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Total | |
|---|---|---|---|---|---|
| Chloroplast | 25 | 28 | 0 | 21 | 74 |
| Others | 73,121 | 994 | 927 | 3,118 | 78,160 |
| Total | 73,146 | 1,022 | 927 | 3,139 | 78,234 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | ncRNA | Total |
|---|---|---|---|---|---|
| Chloroplast | 25 | 28 | 0 | 21 | 74 |
| Others | 73,121 | 994 | 927 | 3,118 | 78,160 |
| Total | 73,146 | 1,022 | 927 | 3,139 | 78,234 |