- Scientific Name
- Brassica oleracea
- Common Names
- wild cabbage;
- Bioproject
- PRJCA020663
- Biosample
- SAMC3157532
- Accession No.
- GWHEQVJ00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Bioinformatics, Smartgenomics Technology Institute
- Contact
- Ning Guo, guoning@nercv.org
- Sequence author(s)
- Ning Guo
- Released Date
- 2023-12-28
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.16.1
- Sequencing & coverage
- PacBio 43.15
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 593,560,721 |
| GC content | 37.04% |
| Chromosomes sequence No. | 9 |
| Genome sequence No. | 10 |
| Maximum genome sequence length (bp) | 78,880,522 |
| Minimum genome sequence length (bp) | 200,667 |
| Average genome sequence length (bp) | 59,356,072 |
| Genome sequence N50 (bp) | 65,839,909 |
| Genome sequence N90 (bp) | 57,493,464 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 53,170 | 53,170 |
| Others | 22 | 22 |
| Total | 53,192 | 53,192 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chrC1 | 5,000 | 5,000 |
| chrC2 | 5,339 | 5,339 |
| chrC3 | 7,698 | 7,698 |
| chrC4 | 5,940 | 5,940 |
| chrC5 | 6,601 | 6,601 |
| chrC6 | 4,431 | 4,431 |
| chrC7 | 5,429 | 5,429 |
| chrC8 | 5,297 | 5,297 |
| chrC9 | 7,435 | 7,435 |
| Others | 22 | 22 |
| Total | 53,192 | 53,192 |