- Scientific Name
- Brassica oleracea
- Common Names
- wild cabbage;
- Bioproject
- PRJCA020663
- Biosample
- SAMC3157534
- Accession No.
- GWHEQVM00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Bioinformatics, Smartgenomics Technology Institute
- Contact
- Ning Guo, guoning@nercv.org
- Sequence author(s)
- Ning Guo
- Released Date
- 2023-12-28
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.16.1
- Sequencing & coverage
- PacBio 45.79
- Download
-
DNA
GFF
RNA
Protein
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 588,360,242 |
| GC content | 37.00% |
| Chromosomes sequence No. | 9 |
| Genome sequence No. | 10 |
| Maximum genome sequence length (bp) | 80,057,606 |
| Minimum genome sequence length (bp) | 72,864 |
| Average genome sequence length (bp) | 58,836,024 |
| Genome sequence N50 (bp) | 64,701,984 |
| Genome sequence N90 (bp) | 58,208,169 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 52,909 | 52,909 |
| Others | 4 | 4 |
| Total | 52,913 | 52,913 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chrC1 | 5,194 | 5,194 |
| chrC2 | 5,402 | 5,402 |
| chrC3 | 7,817 | 7,817 |
| chrC4 | 6,129 | 6,129 |
| chrC5 | 5,957 | 5,957 |
| chrC6 | 4,483 | 4,483 |
| chrC7 | 5,794 | 5,794 |
| chrC8 | 5,435 | 5,435 |
| chrC9 | 6,698 | 6,698 |
| Others | 4 | 4 |
| Total | 52,913 | 52,913 |