- Scientific Name
- Actinidia arguta
- Common Names
- -
- Bioproject
- PRJCA010661
- Biosample
- SAMC3213773
- Accession No.
- GWHBJWW00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Wuhan Botanical Garden, Wuhan Botanical Garden, Chinese Academy of Sciences
- Contact
- Xue-Mei Lu(luxuemei9859@163.com)
- Sequence author(s)
- Xue-Mei Lu, Yanchang Wang
- Released Date
- 2024-03-05
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- HiFiASM PacBio
- Sequencing & coverage
- PacBio 60.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 2,776,160,285 |
| GC content | 36.15% |
| Chromosomes sequence No. | 116 |
| Genome sequence No. | 3,961 |
| Maximum genome sequence length (bp) | 30,938,961 |
| Minimum genome sequence length (bp) | 1,698 |
| Average genome sequence length (bp) | 700,874 |
| Genome sequence N50 (bp) | 22,229,469 |
| Genome sequence N90 (bp) | 18,337,744 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Chromosome | 206,370 | 217 | 206,587 |
| Others | 19,277 | 76 | 19,353 |
| Total | 225,647 | 293 | 225,940 |
Annotation Details
| ChrID | Protein | Pseudogene | Total |
|---|---|---|---|
| chrA1 | 1,715 | 2 | 1,717 |
| chrA10 | 1,553 | 1 | 1,554 |
| chrA11 | 1,416 | 1 | 1,417 |
| chrA12 | 1,594 | 1 | 1,595 |
| chrA13 | 2,169 | 1 | 2,170 |
| chrA14 | 1,568 | 3 | 1,571 |
| chrA15 | 1,845 | 1 | 1,846 |
| chrA16 | 2,113 | 3 | 2,116 |
| chrA17 | 1,528 | 4 | 1,532 |
| chrA18 | 1,784 | 1 | 1,785 |
| chrA19 | 2,196 | 2 | 2,198 |
| chrA2 | 1,696 | 0 | 1,696 |
| chrA20 | 1,706 | 0 | 1,706 |
| chrA21 | 1,580 | 1 | 1,581 |
| chrA22 | 1,574 | 5 | 1,579 |
| chrA23 | 2,496 | 5 | 2,501 |
| chrA24 | 1,713 | 0 | 1,713 |
| chrA25 | 1,471 | 0 | 1,471 |
| chrA26 | 1,830 | 2 | 1,832 |
| chrA27 | 1,473 | 3 | 1,476 |
| chrA28 | 1,662 | 3 | 1,665 |
| chrA29 | 1,514 | 2 | 1,516 |
| chrA3 | 2,535 | 5 | 2,540 |
| chrA4 | 1,133 | 1 | 1,134 |
| chrA5 | 1,527 | 4 | 1,531 |
| chrA6 | 1,867 | 2 | 1,869 |
| chrA7 | 1,728 | 1 | 1,729 |
| chrA8 | 2,187 | 1 | 2,188 |
| chrA9 | 1,576 | 1 | 1,577 |
| chrB1 | 1,812 | 3 | 1,815 |
| chrB10 | 1,533 | 1 | 1,534 |
| chrB11 | 1,431 | 0 | 1,431 |
| chrB12 | 1,659 | 1 | 1,660 |
| chrB13 | 2,241 | 1 | 2,242 |
| chrB14 | 1,599 | 0 | 1,599 |
| chrB15 | 1,841 | 4 | 1,845 |
| chrB16 | 2,305 | 2 | 2,307 |
| chrB17 | 1,473 | 3 | 1,476 |
| chrB18 | 1,884 | 1 | 1,885 |
| chrB19 | 2,206 | 3 | 2,209 |
| chrB2 | 1,683 | 5 | 1,688 |
| chrB20 | 1,702 | 1 | 1,703 |
| chrB21 | 1,668 | 2 | 1,670 |
| chrB22 | 1,607 | 0 | 1,607 |
| chrB23 | 2,337 | 1 | 2,338 |
| chrB24 | 1,734 | 1 | 1,735 |
| chrB25 | 1,520 | 0 | 1,520 |
| chrB26 | 1,809 | 1 | 1,810 |
| chrB27 | 1,547 | 1 | 1,548 |
| chrB28 | 1,646 | 1 | 1,647 |
| chrB29 | 1,548 | 3 | 1,551 |
| chrB3 | 2,549 | 1 | 2,550 |
| chrB4 | 1,162 | 2 | 1,164 |
| chrB5 | 1,545 | 4 | 1,549 |
| chrB6 | 1,887 | 3 | 1,890 |
| chrB7 | 1,736 | 2 | 1,738 |
| chrB8 | 2,181 | 2 | 2,183 |
| chrB9 | 1,574 | 2 | 1,576 |
| chrC1 | 1,853 | 1 | 1,854 |
| chrC10 | 1,481 | 1 | 1,482 |
| chrC11 | 1,482 | 3 | 1,485 |
| chrC12 | 1,644 | 3 | 1,647 |
| chrC13 | 2,238 | 1 | 2,239 |
| chrC14 | 1,607 | 3 | 1,610 |
| chrC15 | 1,879 | 2 | 1,881 |
| chrC16 | 2,199 | 2 | 2,201 |
| chrC17 | 1,551 | 2 | 1,553 |
| chrC18 | 1,837 | 1 | 1,838 |
| chrC19 | 2,202 | 3 | 2,205 |
| chrC2 | 1,689 | 1 | 1,690 |
| chrC20 | 1,734 | 2 | 1,736 |
| chrC21 | 1,630 | 2 | 1,632 |
| chrC22 | 1,524 | 2 | 1,526 |
| chrC23 | 2,664 | 3 | 2,667 |
| chrC24 | 1,798 | 6 | 1,804 |
| chrC25 | 1,510 | 0 | 1,510 |
| chrC26 | 1,905 | 1 | 1,906 |
| chrC27 | 1,563 | 0 | 1,563 |
| chrC28 | 1,692 | 5 | 1,697 |
| chrC29 | 1,592 | 2 | 1,594 |
| chrC3 | 2,157 | 1 | 2,158 |
| chrC4 | 1,149 | 0 | 1,149 |
| chrC5 | 1,565 | 2 | 1,567 |
| chrC6 | 1,891 | 6 | 1,897 |
| chrC7 | 1,792 | 0 | 1,792 |
| chrC8 | 2,253 | 2 | 2,255 |
| chrC9 | 1,627 | 0 | 1,627 |
| chrD1 | 1,842 | 0 | 1,842 |
| chrD10 | 1,606 | 3 | 1,609 |
| chrD11 | 1,459 | 2 | 1,461 |
| chrD12 | 1,678 | 2 | 1,680 |
| chrD13 | 1,947 | 3 | 1,950 |
| chrD14 | 1,496 | 2 | 1,498 |
| chrD15 | 1,917 | 1 | 1,918 |
| chrD16 | 2,367 | 2 | 2,369 |
| chrD17 | 1,545 | 3 | 1,548 |
| chrD18 | 1,879 | 2 | 1,881 |
| chrD19 | 2,192 | 1 | 2,193 |
| chrD2 | 1,745 | 1 | 1,746 |
| chrD20 | 1,826 | 2 | 1,828 |
| chrD21 | 1,667 | 1 | 1,668 |
| chrD22 | 1,617 | 2 | 1,619 |
| chrD23 | 2,629 | 3 | 2,632 |
| chrD24 | 1,827 | 2 | 1,829 |
| chrD25 | 1,560 | 1 | 1,561 |
| chrD26 | 1,883 | 0 | 1,883 |
| chrD27 | 1,591 | 1 | 1,592 |
| chrD28 | 1,745 | 2 | 1,747 |
| chrD29 | 1,602 | 3 | 1,605 |
| chrD3 | 2,758 | 5 | 2,763 |
| chrD4 | 1,195 | 0 | 1,195 |
| chrD5 | 1,393 | 1 | 1,394 |
| chrD6 | 1,824 | 2 | 1,826 |
| chrD7 | 1,786 | 2 | 1,788 |
| chrD8 | 2,255 | 2 | 2,257 |
| chrD9 | 1,663 | 2 | 1,665 |
| Others | 19,277 | 76 | 19,353 |
| Total | 225,647 | 293 | 225,940 |