- Scientific Name
- Arabidopsis thaliana
- Common Names
- mouse-ear cress, thale-cress; thale cress; Arabis thaliana
- Bioproject
- PRJCA007112
- Biosample
- SAMC3270686
- Accession No.
- GWHBFWQ00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Contact
- Yuling Jiao, yuling.jiao@pku.edu.cn
- Sequence author(s)
- Xueren Hou, Depeng Wang, Zhukuan Cheng, Ying Wang, Yuling Jiao
- Released Date
- 2023-12-24
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- NextDenovo 2.3.1
HiFiasm 0.16.1-r375 - Sequencing & coverage
- PacBio 109.0
Nanopore 345.0
Illumina 54.0 - Download
- DNA
- Publication(s)
- Xueren Hou, et al. A near-complete assembly of an Arabidopsis thaliana genome. Molecular Plant. 2022, 15(8): 1247- 1250.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBFWQ00000000 | - | PEK | Draft genome in contig level | 2021-11-10 |
DNA
|
| GWHBFWQ00000000.1 | - | Col-PEK | Draft genome in scaffold level | 2023-12-24 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 133,917,131 |
| GC content | 36.35% |
| Chromosomes sequence No. | 3 |
| Genome sequence No. | 5 |
| Maximum genome sequence length (bp) | 32,638,291 |
| Minimum genome sequence length (bp) | 22,104,501 |
| Average genome sequence length (bp) | 26,783,426 |
| Genome sequence N50 (bp) | 26,150,454 |
| Genome sequence N90 (bp) | 22,104,501 |