- Scientific Name
- Saccharum hybrid cultivar
- Common Names
- sugarcane; Saccharum hybrid cultivar (unknown)
- Bioproject
- PRJCA020426
- Biosample
- SAMC3101573
- Accession No.
- GWHEQVP00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- The Omics Technology Research Center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Shencheng Zhang, zsc-zhang@foxmail.com
- Sequence author(s)
- Xingtan Zhang, Muqing Zhang, Shengcheng Zhang
- Released Date
- 2024-01-16
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.6.0
ALLHiC 0.9.13 - Sequencing & coverage
- Illumina short reads 60.0
PacBio HiFi 20.0
Hi-C 175.0 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Yixue Bao, et al. A chromosomal-scale genome assembly of modern cultivated hybrid sugarcane provides insights into origination and evolution. Nature Communications. 2024, 15(1): 3041.
Statistics of Genome Assembly
| Genome size (bp) | 10,382,411,493 |
| GC content | 44.69% |
| Genome sequence No. | 62,672 |
| Maximum genome sequence length (bp) | 261,042,801 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 165,663 |
| Genome sequence N50 (bp) | 81,010,201 |
| Genome sequence N90 (bp) | 70,692 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 301,886 | 301,886 |