- Scientific Name
- Helianthus annuus
- Common Names
- common sunflower;
- Bioproject
- PRJCA021649
- Biosample
- SAMC3200413
- Accession No.
- GWHAAEK00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- BAP, French National Research Institute for Agriculture, Food and Environment
- Contact
- STEPHANE MUNOS, stephane.munos@inrae.fr
- Sequence author(s)
- STEPHANE MUNOS
- Released Date
- 2024-02-07
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- Hybrid Scaffolding (Optical map + PacBio Hifi) Bionano Hybrid Scaffold
- Sequencing & coverage
- PacBio 17.5
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Camille Pubert, et al. A cluster of putative resistance genes is associated with a dominant resistance to sunflower broomrape. Theoretical and Applied Genetics. 2024, 137(5): 103.
Statistics of Genome Assembly
| Genome size (bp) | 3,009,143,774 |
| GC content | 38.65% |
| Chromosomes sequence No. | 17 |
| Genome sequence No. | 21 |
| Maximum genome sequence length (bp) | 208,794,552 |
| Minimum genome sequence length (bp) | 81,486 |
| Average genome sequence length (bp) | 143,292,561 |
| Genome sequence N50 (bp) | 176,157,410 |
| Genome sequence N90 (bp) | 151,189,438 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 69,352 | 69,352 |
| Others | 30 | 30 |
| Total | 69,382 | 69,382 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,783 | 3,783 |
| chr10 | 3,901 | 3,901 |
| chr11 | 4,496 | 4,496 |
| chr12 | 3,820 | 3,820 |
| chr13 | 4,291 | 4,291 |
| chr14 | 4,489 | 4,489 |
| chr15 | 4,413 | 4,413 |
| chr16 | 4,737 | 4,737 |
| chr17 | 4,365 | 4,365 |
| chr2 | 3,271 | 3,271 |
| chr3 | 4,574 | 4,574 |
| chr4 | 4,428 | 4,428 |
| chr5 | 3,522 | 3,522 |
| chr6 | 3,588 | 3,588 |
| chr7 | 3,190 | 3,190 |
| chr8 | 3,766 | 3,766 |
| chr9 | 4,718 | 4,718 |
| Others | 30 | 30 |
| Total | 69,382 | 69,382 |