- Scientific Name
- Salix brachista
- Common Names
- -
- Bioproject
- PRJCA022812
- Biosample
- SAMC3321899
- Accession No.
- GWHERDS00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR1019886
- GVM variations of the species
- -
- Submitter Organization
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences
- Contact
- jindan wang, wangjd9886@163.com
- Sequence author(s)
- jindan wang
- Released Date
- 2025-02-14
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifisam 0.16.1-r375
- Sequencing & coverage
- PacBio 100.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Jindan Wang, et al. A haplotype-resolved genome assembly and gene expression map of Cushion willow. Scientific data. 2025, 12(1): 785.0.
Statistics of Genome Assembly
| Genome size (bp) | 788,503,412 |
| GC content | 34.89% |
| Chromosomes sequence No. | 36 |
| Organellas sequence No. | 2 |
| Genome sequence No. | 40 |
| Maximum genome sequence length (bp) | 36,017,666 |
| Minimum genome sequence length (bp) | 155,612 |
| Average genome sequence length (bp) | 19,712,585 |
| Genome sequence N50 (bp) | 22,122,785 |
| Genome sequence N90 (bp) | 14,982,111 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Total | |
|---|---|---|---|---|---|
| Chromosome | 82,386 | 1,207 | 1,414 | 1,110 | 86,117 |
| Chloroplast | 18 | 28 | 0 | 19 | 65 |
| Mitochondrion | 41 | 19 | 0 | 15 | 75 |
| Others | 3,819 | 47 | 0 | 72 | 3,938 |
| Total | 86,264 | 1,301 | 1,414 | 1,216 | 90,195 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | ncRNA | Total |
|---|---|---|---|---|---|
| chr1 | 5,552 | 62 | 2 | 30 | 5,646 |
| chr10 | 5,804 | 94 | 0 | 64 | 5,962 |
| chr11 | 3,278 | 71 | 366 | 63 | 3,778 |
| chr12 | 2,951 | 64 | 0 | 69 | 3,084 |
| chr13 | 3,293 | 42 | 56 | 78 | 3,469 |
| chr14 | 4,445 | 42 | 0 | 41 | 4,528 |
| chr16 | 8,239 | 124 | 5 | 122 | 8,490 |
| chr17 | 3,036 | 46 | 0 | 49 | 3,131 |
| chr18 | 3,161 | 53 | 0 | 68 | 3,282 |
| chr19 | 2,550 | 23 | 975 | 58 | 3,606 |
| chr2 | 6,256 | 79 | 0 | 72 | 6,407 |
| chr3 | 4,960 | 64 | 1 | 31 | 5,056 |
| chr4 | 4,402 | 74 | 0 | 77 | 4,553 |
| chr5 | 5,677 | 80 | 0 | 91 | 5,848 |
| chr6 | 6,512 | 76 | 5 | 81 | 6,674 |
| chr7 | 3,281 | 46 | 0 | 40 | 3,367 |
| chr8 | 5,108 | 82 | 0 | 37 | 5,227 |
| chr9 | 3,881 | 85 | 4 | 39 | 4,009 |
| Chloroplast | 18 | 28 | 0 | 19 | 65 |
| Mitochondrion | 41 | 19 | 0 | 15 | 75 |
| Others | 3,819 | 47 | 0 | 72 | 3,938 |
| Total | 86,264 | 1,301 | 1,414 | 1,216 | 90,195 |