- Scientific Name
- Lactuca sativa
- Common Names
- cultivated lettuce; garden lettuce;
- Bioproject
- PRJCA023446
- Biosample
- SAMC3365671
- Accession No.
- GWHERDY00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Beijing Vegetable Research Center, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Sciences
- Contact
- Bin Zhang, zhangbin@nercv.org
- Sequence author(s)
- Bin Zhang
- Released Date
- 2024-03-14
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm v0.19 Hifiasm v0.19
- Sequencing & coverage
- PacBio 46.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Bin Zhang, et al. A near-complete chromosome-level genome assembly of looseleaf lettuce (Lactuca sativa var. crispa). Scientific data. 2024, 11(1): 961.
Statistics of Genome Assembly
| Genome size (bp) | 2,590,683,526 |
| GC content | 37.96% |
| Chromosomes sequence No. | 1 |
| Genome sequence No. | 77 |
| Maximum genome sequence length (bp) | 407,155,707 |
| Minimum genome sequence length (bp) | 23,638 |
| Average genome sequence length (bp) | 33,645,241 |
| Genome sequence N50 (bp) | 320,756,150 |
| Genome sequence N90 (bp) | 213,762,666 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 3,543 | 3,543 |
| Others | 37,727 | 37,727 |
| Total | 41,270 | 41,270 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr6 | 3,543 | 3,543 |
| Others | 37,727 | 37,727 |
| Total | 41,270 | 41,270 |