- Scientific Name
- Brassica rapa subsp. chinensis
- Common Names
- bok-choy; Brassica campestris subsp. chinensis (L.) Makino, 1912, Brassica campestris subsp. chinensis var. communis, Brassica chinensis, Brassica chinensis var. communis, Brassica oleracea var. chinensis, Brassica rapa (Chinensis Group), Brassica rapa Pak Choi Group, Brassica rapa subsp. chinensis var. communis, Brassica rapa var. amplexicaulis, Brassica rapa var. chinensis, Brassica rapa var. communis, Brassica rapa var. utilis M.Tsen & S.H.Lee, Brassica rapa var. utilis
- Bioproject
- PRJCA019480
- Biosample
- SAMC3057437
- Accession No.
- GWHERGL00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR875501
- GVM variations of the species
- -
- Submitter Organization
- College of Life Science, Wuhan University
- Contact
- Yifan Zhou(117711731@qq.com)
- Sequence author(s)
- Yifan Zhou
- Released Date
- 2024-04-01
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- hifiasm hifiasm-0.18.6
- Sequencing & coverage
- PacBio 300.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Yifan Zhou, et al. The complexity of structural variations in Brassica rapa revealed by assembly of two complete T2T genomes. Science Bulletin. 2024, 69(15): 2346-2351.
Statistics of Genome Assembly
| Genome size (bp) | 442,090,047 |
| GC content | 37.82% |
| Chromosomes sequence No. | 10 |
| Organellas sequence No. | 2 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 49,308 | 49,308 |
| Total | 49,308 | 49,308 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 5,142 | 5,142 |
| chr10 | 3,627 | 3,627 |
| chr2 | 4,847 | 4,847 |
| chr3 | 6,944 | 6,944 |
| chr4 | 3,544 | 3,544 |
| chr5 | 4,653 | 4,653 |
| chr6 | 5,165 | 5,165 |
| chr7 | 4,519 | 4,519 |
| chr8 | 3,811 | 3,811 |
| chr9 | 7,056 | 7,056 |
| Total | 49,308 | 49,308 |