logo
Advanced

  • Fragaria x ananassa
  • Fana_Yuexin
    • Scientific Name
    Fragaria x ananassa
    Common Names
    strawberry; Fragaria ananassa, Fragaria chiloensis x Fragaria virginiana, Fragaria virginiana x Fragaria chiloensis
    Bioproject
    PRJCA022906
    Biosample
    SAMC3312774
    Accession No.
    GWHERLF00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR1015223
    GVM variations of the species
    -
    Submitter Organization
    institute of fruit science, Zhejiang University
    Contact
    Jiao Lu(12116036@zju.edu.cn)
    Sequence author(s)
    Jiao Lu
    Released Date
    2024-11-20
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    Hifiasm version 0.16.1-r375
    Sequencing & coverage
    PacBio 86.0
    Illumina NovaSeq 6000 65.0
    HiC 111.0
    Download
    DNA GFF RNA CDS Protein
    Reannotation Download
    -
    Publication(s)
    Jiao Lu, et al. Haplotype-resolved chromosome-level genome assembly of Fragaria×ananassa Duch. cv. 'Yuexin'. Scientific Data. 2025, 12(1): 974.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHERLF00000000 - Fana_Yuexin Draft genome in chromosome level 2024-11-20 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 835,683,665
    GC content 39.36%
    Chromosomes sequence No. 28
    Genome sequence No. 1,331
    Maximum genome sequence length (bp) 35,867,242
    Minimum genome sequence length (bp) 19,629
    Average genome sequence length (bp) 627,862
    Genome sequence N50 (bp) 27,619,066
    Genome sequence N90 (bp) 22,156,451
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 108,824 108,824
    Others 974 974
    Total 109,798 109,798
    Annotation Details
    ChrID Protein Total
    chrA1 4,179 4,179
    chrA2 5,436 5,436
    chrA3 4,036 4,036
    chrA4 2,581 2,581
    chrA5 3,036 3,036
    chrA6 4,072 4,072
    chrA7 3,297 3,297
    chrB1 3,599 3,599
    chrB2 5,389 5,389
    chrB3 3,691 3,691
    chrB4 3,253 3,253
    chrB5 4,230 4,230
    chrB6 3,452 3,452
    chrB7 3,556 3,556
    chrC1 3,690 3,690
    chrC2 4,866 4,866
    chrC3 3,785 3,785
    chrC4 3,609 3,609
    chrC5 4,762 4,762
    chrC6 3,896 3,896
    chrC7 2,577 2,577
    chrD1 4,986 4,986
    chrD2 5,365 5,365
    chrD3 4,178 4,178
    chrD4 3,296 3,296
    chrD5 3,867 3,867
    chrD6 3,356 3,356
    chrD7 2,784 2,784
    Others 974 974
    Total 109,798 109,798