- Scientific Name
- Escherichia
- Common Names
- -
- Bioproject
- PRJCA023842
- Biosample
- SAMC3409966
- Accession No.
- GWHERMJ00000000
- GWH reannotation accession
- GWHRA_ERMJ00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Health Supervision and Surveillance, Chinese PLA Center for Disease Control and Prevention
- Contact
- Kexin Li(likexin0903@foxmail.com)
- Sequence author(s)
- Xiaofeng Hu
- Released Date
- 2024-04-01
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes Unicycler v0.5.0
- Sequencing & coverage
- Illumina HiSeq 2500 100
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHERMJ00000000 | GWHRA_ERMJ00000000.1 | EC18 | Draft genome in scaffold level | 2024-04-01 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,175,182 |
| GC content | 50.41% |
| Scaffold sequence No. | 172 |
| Maximum scaffold sequence length (bp) | 507,241 |
| Minimum scaffold sequence length (bp) | 208 |
| Average scaffold sequence length (bp) | 30,088 |
| Scaffold N50 (bp) | 154,419 |
| Scaffold N90 (bp) | 26,148 |
Statistics of Genome Assembly
| Genome size (bp) | 5,175,182 |
| GC content | 50.41% |
| Scaffold sequence No. | 172 |
| Maximum scaffold sequence length (bp) | 507,241 |
| Minimum scaffold sequence length (bp) | 208 |
| Average scaffold sequence length (bp) | 30,088 |
| Scaffold N50 (bp) | 154,419 |
| Scaffold N90 (bp) | 26,148 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4,965 | 80 | 3 | 6 | 200 | 194 | 5,448 |