- Scientific Name
- Escherichia
- Common Names
- -
- Bioproject
- PRJCA023842
- Biosample
- SAMC3409978
- Accession No.
- GWHERMV00000000
- GWH reannotation accession
- GWHRA_ERMV00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Health Supervision and Surveillance, Chinese PLA Center for Disease Control and Prevention
- Contact
- Kexin Li(likexin0903@foxmail.com)
- Sequence author(s)
- Xiaofeng Hu
- Released Date
- 2024-04-01
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes Unicycler v0.5.0
- Sequencing & coverage
- Illumina HiSeq 2500 100
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHERMV00000000 | GWHRA_ERMV00000000.1 | EC30 | Draft genome in scaffold level | 2024-04-01 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,261,688 |
| GC content | 50.27% |
| Scaffold sequence No. | 158 |
| Maximum scaffold sequence length (bp) | 545,205 |
| Minimum scaffold sequence length (bp) | 203 |
| Average scaffold sequence length (bp) | 33,302 |
| Scaffold N50 (bp) | 167,017 |
| Scaffold N90 (bp) | 32,550 |
Statistics of Genome Assembly
| Genome size (bp) | 5,261,688 |
| GC content | 50.27% |
| Scaffold sequence No. | 158 |
| Maximum scaffold sequence length (bp) | 545,205 |
| Minimum scaffold sequence length (bp) | 203 |
| Average scaffold sequence length (bp) | 33,302 |
| Scaffold N50 (bp) | 167,017 |
| Scaffold N90 (bp) | 32,550 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5,031 | 80 | 4 | 6 | 154 | 180 | 5,455 |