- Scientific Name
- Rosa roxburghii
- Common Names
- chestnut rose, chinquapin rose;
- Bioproject
- PRJCA023901
- Biosample
- SAMC3410464
- Accession No.
- GWHEROQ00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Resource Institute for Chinese and Ethnic Materia medica, Guizhou University of Traditional Chinese Medicine
- Contact
- Qiao Xiao, xqqiao2021@163.com
- Sequence author(s)
- Tong Yang
- Released Date
- 2024-03-23
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- necat 2021 Jan 4
- Sequencing & coverage
- Oxford Nanopore Technologies 100.0
- Download
- DNA GFF RNA Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 529,883,935 |
| GC content | 39.46% |
| Chromosomes sequence No. | 7 |
| Genome sequence No. | 180 |
| Maximum genome sequence length (bp) | 96,664,809 |
| Minimum genome sequence length (bp) | 823 |
| Average genome sequence length (bp) | 2,943,800 |
| Genome sequence N50 (bp) | 67,733,215 |
| Genome sequence N90 (bp) | 50,972,200 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 42,956 | 42,956 |
| Others | 2,133 | 2,133 |
| Total | 45,089 | 45,089 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 7,585 | 7,585 |
| chr2 | 7,994 | 7,994 |
| chr3 | 5,816 | 5,816 |
| chr4 | 5,602 | 5,602 |
| chr5 | 5,498 | 5,498 |
| chr6 | 4,301 | 4,301 |
| chr7 | 6,160 | 6,160 |
| Others | 2,133 | 2,133 |
| Total | 45,089 | 45,089 |