Genome Warehouse

Scientific Name: Malus micromalus
Common Names: Kaido crab apple; Malus x micromalus
Bioproject: PRJCA015452
Biosample: SAMC1150995
Accession No.: GWHCAYL00000000
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: -
Submitter Organization: Institute for Horticultural Plants, China Agricultural University
Contact: Wei Li(liwei0522898@163.com), Haochen Sun(fei_chen980615@163.com)
Sequence author(s): Wei Li, Chong Chu, Taikui Zhang, Haochen Sun, Shiyao Wang, Zeyuan Liu, Zijun Wang, Zhenhai Han
Released Date: 2025-02-10
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: hifiasm v0.15.2_r334
Sequencing & coverage: PacBio 44.99
Download: DNA GFF RNA CDS Protein
Reannotation Download: -
Publication(s): Wei Li, et al. Pan-genome analysis reveals the evolution and diversity of Malus. Nature Genetics. 2025, 57(5): 1274-1286.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHCAYL00000000	-	Malus micromalus haploid consensus genome	Draft genome in chromosome level	2025-02-10	DNA GFF RNA CDS Protein

Genome size (bp)	700,019,730
GC content	38.36%
Chromosomes sequence No.	17
Genome sequence No.	52
Maximum genome sequence length (bp)	56,432,426
Minimum genome sequence length (bp)	2,000
Average genome sequence length (bp)	13,461,918
Genome sequence N50 (bp)	36,628,552
Genome sequence N90 (bp)	30,126,442

Annotation of Whole Genome Assembly

Annotation Details