- Scientific Name
- Misgurnus anguillicaudatus
- Common Names
- dojo loach, golden dojo loach, Japanese weatherfish, oriental weatherloach, weather loach; oriental weatherfish; Cobitis anguillicaudata
- Bioproject
- PRJCA024750
- Biosample
- SAMC3481865
- Accession No.
- GWHERQG00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR1184675
- GVM variations of the species
- -
- Submitter Organization
- college of fisheries, Huazhong Agricultural University
- Contact
- qingshan Li(1141869121@qq.com)
- Sequence author(s)
- qingshan Li
- Released Date
- 2024-04-03
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- hifiasm 0.16.1
- Sequencing & coverage
- PacBio 30.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Bing Sun, et al. Chromosome-scale and haplotype-resolved genome assembly of the autotetraploid Misgurnus anguillicaudatus. Scientific data. 2024, 11(1): 1059.
Statistics of Genome Assembly
| Genome size (bp) | 1,118,369,984 |
| GC content | 38.03% |
| Chromosomes sequence No. | 25 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 22,480 | 22,480 |
| Total | 22,480 | 22,480 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 1,224 | 1,224 |
| chr10 | 816 | 816 |
| chr11 | 724 | 724 |
| chr12 | 926 | 926 |
| chr13 | 969 | 969 |
| chr14 | 855 | 855 |
| chr15 | 874 | 874 |
| chr16 | 776 | 776 |
| chr17 | 826 | 826 |
| chr18 | 515 | 515 |
| chr19 | 928 | 928 |
| chr2 | 1,171 | 1,171 |
| chr20 | 696 | 696 |
| chr21 | 769 | 769 |
| chr22 | 928 | 928 |
| chr23 | 853 | 853 |
| chr24 | 709 | 709 |
| chr25 | 821 | 821 |
| chr3 | 928 | 928 |
| chr4 | 1,214 | 1,214 |
| chr5 | 1,172 | 1,172 |
| chr6 | 1,028 | 1,028 |
| chr7 | 928 | 928 |
| chr8 | 1,004 | 1,004 |
| chr9 | 826 | 826 |
| Total | 22,480 | 22,480 |